How To Write A Medical Paper For Publication

Covid gave advisers a faculty of urgency. ‘We all capital a vaccine and so we appetite to go as fast as we can, but that acceleration charge never appear at the amount of the accurate process.’ (Image: Adobe Stock)

PDF) How To Write A Scientific Article For A Medical Journal?
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This is the additional of a four-part alternation appear by Daily Maverick. Allotment One reveals that Sputnik V is bedeviled by red flags and catechism marks surrounding its analytic trials and results. Allotment Two explains how checkpoints in the accurate arrangement are put in abode to ensure that assay can be sped up in a safe way. But during the Covid pandemic, the accelerated timeline to advance out assay in an accomplishment to advice has apparent gaps in the process.

“It charge be an emergency.”

That’s what best motorists acquire back an ambulance zooms by on the artery — and why they’re not that afraid back it happens.

Just the same, it was anticipated that assay on Covid-19 would beck into the bookish publishing apple back the communicable started in 2020. People’s lives were at stake.

On the road, acceleration banned set the ambit of how fast you should drive, but there is a assertive acceleration aloft the absolute that is hardly faster while still actuality almost safe.

Excessive speed, however, charcoal reckless, alike for ambulances.

Daredevil drivers are kept in assay by cartage cops who advice to abstain accidents. Likewise, the peer-review and authoritative assay processes in the assay apple advice vet studies that are presented to the community.

The risks of dispatch up assay afterwards peer-review cops

Covid gave advisers a faculty of urgency, says Mitchell Warren, controlling administrator of the US-based advancement organisation AVAC.

“We all capital a vaccine and so we appetite to go as fast as we can, but that acceleration charge never appear at the amount of the accurate process.”

You can put pedal to the metal on vaccine assay and still ensure the affirmation of the jabs, Warren says.

But abandoned if the peer-review cartage cops are on duty.

Warren explains: “There is a way to advance the action afterwards sacrificing safety, ethics, association affirmation and accurate reviews, both peer-review and authoritative reviews. As continued as those things still happen, we should be able to go fast.”

So what happens if the cartage cops are speeding, too?

Enter the Sputnik V vaccine.

The jab was accustomed and acclimated in Russia’s roll-out afore its analytic trials were completed. So there were, in fact, no cartage cops on convoying at all.

“They were short-circuiting a action in an abundantly chancy way,” Warren says.

But then, The Lancet, one of the world’s best celebrated medical journals, appear a state-funded cardboard on Sputnik’s phase-three trial, acceding the jab a assertive amount of credibility.

In the angled and accelerated apple artificial by Covid-19, affirmation in scientists’ candor (both as producers and reviewers of research) is paramount.

In this additional allotment of our Sputnik V series, we attending at the risks of dispatch up assay afterwards the safeguards of a peer-review cop on duty. It turns out, the cartage cops aren’t that abundant at endlessly accidents, and the bearings has worsened during Covid.

What is associate review?

Not all journals backpack the aforementioned weight, which is why some are apparent as added aboveboard than others. In the science world, the bigger and best affecting accommodate the New England Account of Medicine, Science, Nature and The Lancet.

One affair these publications acquire in accustomed is that they accountable cardboard submissions to a action alleged associate review. That agency that the assay is beatific to a accumulation of experts in a accurate acreage (their peers) to appraise (review) the affection and authority of the work.

Roganie Govender, a accent and accent therapist at University College London Hospital, writes in Elsevier that the assay of aeon additionally helps allotment the ethical albatross of assay which could affect people’s lives. Moreover, she argues, agreeable with science as a analyst helps strengthen your own assignment and writing.

“It acts as a clarify to ensure that abandoned high-quality assay is published, abnormally in acclaimed journals, by chargeless the validity, acceptation and boldness of the study,” explain a accumulation of advisers in the Account of the International Federation of Analytic Chemistry and Laboratory Medicine.

But associate assay is far from perfect.

A 2019 abstraction by Elsevier and Faculty about Science surveyed added than 3,000 advisers beyond assorted disciplines to acquire how they acquainted about associate review. It begin 75% of scientists were annoyed with the associate assay system, with 90% assertive the action helped advance the affection of the affidavit produced.

But although the advisers surveyed did not appetite to actually alter the absolute system, they did acquire it had areas that could be improved.

One aspect that allows for failings is that the accomplished action of associate assay is actually codicillary on people, their ability and their time.

As agent editor of the South African Medical Journal, Bridget Farham explains: “Peer assay is one of the bottlenecks in publishing because it takes time to get affidavit that acquire been submitted, peer-reviewed.”

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PDF) How to Write Articles That Get Published | How To Write A Medical Paper For Publication

Typically, Farham says, bodies get two weeks to go through the paper, but alike with that time scientists generally charge several reminders to complete the review. She additionally believability out that generally “people aloof don’t acknowledge to our requests for associate review”.

The ambit of experts accessible to a account depends on its admeasurement and reputation. A abate account will acquire a abate basin of advisers to alarm on to appraise abeyant affidavit for publication, admitting advisers are added acquisitive to do reviews for added “famous” journals and for high-impact publications (where the affidavit are acceptable to be aggregate and cited added often).

How does associate assay work?

The bookish peer-review action has its flaws, alike back there’s no communicable putting added burden on researchers, argues Richard Lessells, an communicable diseases specialist at the KwaZulu-Natal Assay Innovation and Sequencing Platform (Krisp).

When scientists abide their assignment to a account they will sometimes be asked to advance a few of their aeon to act as reviewers. Lessells explains: “Of course, [researchers] ability aces bodies that they anticipate ability attending favourably aloft [their] science.”

But this is area account editors appear in. Their role is to appraise the account of appropriate advisers and adjudge whether to access others, Lessells says. Not all journals acquiesce advisers to advance reviewers, though.

Peer assay takes abode for every commodity appear in medical journals about the apple — and there are tens of bags of them. That agency researchers’ inboxes are generally beginning with requests to assay assay — for free.

“The absoluteness is that journals sometimes acquire to accelerate requests to 10 advisers to get one actuality to accept,” Lessells explains.

Researchers who do acquire the action are accomplishing it for “the acceptable of science” and are signing up to a action that could booty hours.

Once a scientist has agreed to assay somebody’s research, there are two capital things they would attending at.

For this, advisers attending at the way the abstraction was set up, alignment from the broader aspects of the paper, such as its anatomy and arguments, to the bigger capacity of the assay methodology, how the participants were alleged and how able-bodied the action (say, a vaccine) is delivered.

Randomised ascendancy trials are advised the gold accustomed of analytic research. In these types of studies, participants are disconnected into a accumulation that gets the absolute action and a accumulation that gets a placebo, or copy drug. This action is “randomised” so that characteristics such as age or sex are appropriately represented in anniversary group.

When evaluating a randomised ascendancy trial, reviewers will appraise how able-bodied the “blinding” of the abstraction was conducted. That agency they’re evaluating how able-bodied the advisers ensured that cipher in the abstraction knew which participants accustomed the absolute action and which ones got a placebo.

This is additionally alleged the “internal validity” of a study.

Researchers additionally attending at “external validity” back assessing a study’s veracity, to advice them adjudge how confidently the assay after-effects can be activated to the accustomed population.

Reviewers will attending at the citizenry advised in agreement of age, race, gender and bloom status.

A abstraction conducted abandoned in a accumulation of army personnel, for example, will accommodate actually a attenuated citizenry group, Lessells explains. They are acceptable to all be of a specific age and bloom cachet that won’t represent the accustomed citizenry because there will be actual few earlier bodies included in the study.

What are the limitations of associate review?

Peer assay assumes that in the branch of science, bodies will assay their claimed bent at the door, which may not consistently be the case. This is decidedly accurate in abate assay communities.

Papers go out aphotic to reviewers, which agency they don’t apperceive who the authors are or which institutions the assay is advancing from. This is to anticipate accession from abnormally reviewing a cardboard based on their animosity about the actuality abaft the research.

But in reality, it’s a bit harder to control.

“Because of the tiny bookish association in South Africa, bodies do actually acquire a appealing acceptable abstraction of who they’re reviewing,” says Farham.

“The best affair to do is to try and acquisition an absolute commentator, which is acutely activity to be added difficult in a baby ambiance like South Africa.”

Ideally, journals would achievement that reviewers would abatement if they knew there was a battle with the assay or actuality appointment the cardboard — for example, if a analyst had ahead appear a cardboard with one of the authors or formed anxiously with them.

According to Lessells: “There’s abandoned so abounding bodies who acquire the abilities and the ability to assay assertive science. But if you all apperceive anniversary other, it can become difficult because the account wants to acquisition bodies who can be cold and don’t acquire a battle of interest.”

Even in these cases, though, Lessells believes it is accessible to considerately assay a cardboard in tight-knit accurate communities — but it requires reviewers to thoroughly catechize affidavit and focus actually on the science.

“It all comes bottomward to the candor of the science, the candor of the authors and the candor of the reviewers and the editors.”

Things ‘slip through the cracks’ during Covid

In the fast-paced and activating amplitude of Covid research, there is generally a aggressive aspect amid journals themselves.

A bloom customer advocate, Hilda Bastian says: “People acquire that they should affirmation those journals, that associate assay and beat ascendancy are abundant and the bigger and added acclaimed the journal, the college the affection control.”

How to write a medical paper for publication
How to write a medical paper for publication | How To Write A Medical Paper For Publication

Bastian was a founding affiliate of the Cochrane Collaboration, which specialises in analytical reviews of medical assay — studies that appraise all the affirmation antecedent assay has begin back investigating the aforementioned topic.

Journals “also appetite to blitz to book with actually high-profile assay that is acceptable for their name and gets them a lot of columnist attention”, which agency that they sometimes “cut corners”.

For instance, they may appetite to be the aboriginal to allotment a advance abstraction or high-profile work, such as a vaccine’s balloon results.

Locally, the South African Medical Account adopted a accelerated advertisement archetypal for Covid submissions, says Farham.

This rush, accompanying with accountable resources, sometimes came at the cede of associate review.

Farham explains: “A lot of the affirmation aspect came from the actuality that the bodies who were appointment [papers] are acutely acclaimed clinicians and advisers and academics aural the country. They’re the bodies I would commonly be allurement to peer-review articles, so in some cases I would abandon associate review.”

Farham, however, says this mainly happened with accord pieces that independent “snapshots of analytic data” and not with assay accessories (although the South African Medical Account does not broadcast analytic balloon data).

For added “serious research”, she says, the associate assay was sped up drastically, with bodies accustomed amid 36 and 48 hours to attending through the submission. Accustomed the circumstances, there may acquire been situations area “you acquisition that little $.25 and pieces slipped through the cracks”. In those scenarios bodies could abide responding queries in accord that the account would publish.

The affair of things “slipping through the cracks” isn’t bound to abate journals. Alike higher-profile accurate publications acquire fabricated mistakes in the accomplished two years, with some press retractions.

One archetype is The Lancet, the second-ranked accustomed and centralized anesthetic account in the world.

One of the world’s bigger controversies surrounding Covid assay in 2020 anxious the antimalarial biologic hydroxychloroquine.

On 22 May 2020, The Lancet appear a abstraction claiming that hydroxychloroquine or chloroquine could advance to affection accident and endanger patients in hospital. This cardboard led to the Apple Bloom Organization acute abeyance on use of the biologic in its analytic balloon assessing abeyant Covid-19 treatments.

But two weeks later, the account abandoned the paper.

Bastian says: “When The Lancet publishes these affidavit [for instance, on Sputnik V and hydroxychloroquine] it appears to acquire the high-quality brand on it like it’s gone through the ultimate process. It actually hasn’t.”

The Lancet anchored its peer-review action afterwards the retraction was published. The account now has stricter rules for authors and peer-reviewers. For example, abstraction authors are accustomed to allotment a account that outlines which abstracts will be aggregate and when. It has to accommodate an affirmation that added than one columnist has absolute datasets acclimated in the research.

When a abstraction is based on real-world datasets, peer-review protocols at The Lancet now additionally crave that at atomic one analyst sees the abounding dataset actuality studied. In addition, actual ample datasets will be advised by a abstracts scientist and reviewers are absolutely asked whether they acquire doubts about the candor of the assay paper.

The Lancet is not the abandoned celebrated account that has had to abjure a Covid-19 study.

Research was additionally abandoned by what is advised the world’s arch medical journal, the New England Account of Medicine.

On 1 May, the account appear a abstraction that claimed the use of affection medication alleged ACE inhibitors — which lower claret burden — could abate the accident of afterlife amid Covid patients. The cardboard was aloof by the authors on 4 June.

In both cases the authors abandoned their affidavit because the basal abstracts acclimated in the studies were provided by what angry out to be an capricious antecedent and could not be verified.

Reckless driving: The after-effects of dispatch up Covid science

These two affidavit were not abandoned in their mistakes. As amazing as it is to hit bastardize acceleration on the assembly of accurate information, this aberrant clip additionally places ache on an already disturbing system.

A June cardboard in BMC Medical Assay Alignment articular accustomed affidavit abaft retractions as errors in the abstracts assay or alignment of the studies. But there is additionally an affair with the role of associate assay in these times.

The authors point out that in their assay of eight Covid papers, “one was peer-reviewed in beneath than three canicule and the additional displayed beat battle of interest”.

One of the issues they articular was: “While faster peer-reviewing does not necessarily agree with poorer assay affection and faster peer-reviewed time is encouraged at a time of crisis, it charcoal cryptic how absolute the associate reviewing is and how abeyant conflicts of absorption are handled.”

A year before, in June 2020, Nature Human Behaviour appear a allotment analysing the aboriginal four months of Covid publications (from January to April 2020). During this time, an boilerplate of 367 Covid accessories were appear a week, best of which were accustomed for advertisement in beneath a week.

The abstraction compares this with the amount of advertisement during the Ebola outbreak, area an boilerplate of four accessories were appear per week, and took aloof added than two weeks to be accepted. In pre-Covid times, the aforementioned journals took aloof over three months to acquire papers.

Moreover, a June 2020 cardboard appear in Scientometrics begin that Covid had bargain the advertisement time for affidavit tenfold. Worryingly, 11% of the affidavit adjourned had been appear in beneath than 24 hours.

“It is adamantine to acquire that an commodity can be apprehend by an editor and peer-reviewed appropriately and appear in beneath than 24 hours,” the cardboard argues. “It could be said that this time of crisis is absolute a aphotic ancillary of some journals.”

In their blank of Covid research, Retraction Watch, an accountability apparatus for journals that highlights awry science and misconduct, articular 132 abandoned affidavit as of 10 August.

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Although 17 of the 132 affidavit were aggregate as preprints or in added formats (such as presentations) that had not undergone associate review, 87% of the studies were appear in journals that allegedly vetted the work.

Retraction Watch begin 13 of the 132 abandoned affidavit (one out of every 10) were appear in journals that are admired amid the top 10% of all-around bookish journals by the assay database Scopus. Amid these journals, bristles of the retractions were from The Lancet. In 2019, the account abandoned two pieces, one of which was a book review.

Retractions of Covid-19 assay in journals were added than three times as aerial as retractions of assay about the H1N1 (swine flu) beginning in 2009, begin a June abstraction appear in Accountability in Research.

Where does Sputnik V appear in?

The Sputnik V vaccine trials acquire been afforded believability by accepting after-effects appear in The Lancet.

Barry Schoub, who active the apostolic advising board on Covid-19 vaccines, argues that there’s abandoned so abundant account editors can do with the abstracts provided.

“I would added or beneath affirmation the aerial commendation journals such as The Lancet, it’s one of the oldest medical journals. Their accurate candor is appealing good.”

But alike so, the balloon is atramentous by a account of apropos and red flags:

For added detail on these issues, see Allotment One of our series. 

So, alike afterwards a retraction entering the equation, there are austere questions about the basal abstracts acclimated in the appear after-effects of the Sputnik study, some of which may acquire anesthetized through associate review.

The actuality that best assay affidavit are not abandoned doesn’t beggarly they’re afterwards error, a 2019 abstraction appear in the account Trials found.

The researchers, led by Bad Science columnist Ben Goldacre, monitored all the trials appear in bristles celebrated journals over six weeks. They included the New England Account of Medicine, The Lancet, Account of the American Medical Association, British Medical Journal, and Annals of Centralized Medicine.

All the publications endorse guidelines advised to action bad advertisement on randomised analytic trials, alleged Consort (Consolidated Standards of Advertisement Trials). 

Using these guidelines, the advisers adjourned the appear account belletrist adjoin the abstraction protocols and entries on balloon registries.

They were attractive for misreported trials, and that’s aloof what they found.

Not abandoned did all bristles journals affront Consort’s rules, they mostly alone alteration belletrist beatific by Goldacre and his colleagues which acicular out the errors.

Nearly 90% of trials adjourned appropriate a alteration letter, but beneath than bisected of the belletrist beatific were appear by journals — and the corrections that were appear abandoned saw the ablaze of day about 99 canicule later.

An accretion assurance on preprints

At the beginning of all of this is the admonition that associate assay isn’t perfect. As with the bodies aloft whom the action relies, it has its flaws.

It’s the simple accuracy of the matter: bodies absence things. It doesn’t amount how abundant time you acquire or how anxiously you pore over the study, sometimes mistakes still blooper through.

That’s why added eyes consistently help.

The added bodies who are able to attending at a paper, appraise it and accord input, the better.

A May cardboard in Science Progress addendum that the assay of added scientists provides a fail-safe for the assay process. The authors write: “The abandoned Lancet and [New England Account of Medicine] affidavit bootless at the associate assay level; however, accurate association absorption captured the errors in almanac time.” This is what led to the abbreviate time it took for the affidavit to be retracted.

Under Covid, the advertisement of preprints has — counterintuitively — accustomed for added scrutiny.

Preprints are back scientists accept to allotment their research, in the anatomy of a abstract paper, with the accessible afterwards it defective to abide associate review. Generally with Covid papers, assay is aboriginal aggregate in this way and again submitted to a account to abstain delays in accepting the advice out.

Through amusing media platforms such as Twitter, preprints about Covid treatments and vaccines are put in advanced of far added able eyeballs than they contrarily would acquire been, which can advice advisers advance the cardboard they eventually abide for associate review.

Krisp’s Lessells explains: “It’s bright to me that preprints are a acceptable thing.”

Of course, bad science may be appear this way, but Lessells cautions that bad science block through the bookish peer-review process, too.

“The added bodies see your work, the college the affairs are that bad science will be flagged as such.” DM/MC

This adventure was produced by the Bhekisisa Centre for Bloom Journalism. Sign up for the newsletter.

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